PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678352329
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 453aa    MW: 49801.5 Da    PI: 8.0073
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678352329genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17147197156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++ge
  678352329 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRGE 197
                78*******************......55*************************997 PP

2AP2445.5e-14239289155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  678352329 239 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 289
                89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-9147197IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16147204IPR016177DNA-binding domain
CDDcd000181.59E-11147203No hitNo description
PROSITE profilePS5103217.556148204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17148204IPR001471AP2/ERF domain
SMARTSM003801.3E-31148210IPR001471AP2/ERF domain
PfamPF008471.2E-9239289IPR001471AP2/ERF domain
CDDcd000181.56E-24239299No hitNo description
SuperFamilySSF541715.1E-17239299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-16240297IPR001471AP2/ERF domain
PROSITE profilePS5103215.461240297IPR001471AP2/ERF domain
SMARTSM003803.9E-32240303IPR001471AP2/ERF domain
PRINTSPR003673.9E-6241252IPR001471AP2/ERF domain
PRINTSPR003673.9E-6279299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MWDLNHEPLG EKGKGVLSGS DSGSSVVVVE DEQQTVVDCS RMSAKKKSGS GRKIFGFCVG  60
SEFEEEIDQS SNSKSLPVTR NFFPVGDADE VVVVGGEAAP NFPRAAHWVG IEFSNGGGGG  120
SSFLGRPAAV ETTRIKKNRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGEDAD INFCLEDYAE DLEKMTNLSK EEFVQVLRRQ STGFPRGSSK  240
YRGVTLHKCG RWEARMGQFL GKKYVYLGLF DTEIEAARAY DKAAIKCNGK EAVTNFDPSV  300
YQEELRAGGE SSSNNEPDHT LTLSLGNSIP IGESPSVCCS TEVDPRRRAA VPQPEQLSFG  360
ALQPRHGESQ MAFQLSHVTC HGPKEAGRAT EGHLVHAPFT LQGYNNIQHQ QQVRSLEHHH  420
NPWFASAASS GFPLLPRSVL QTKGSHHPAL RPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099111.11e-129PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479271e-108AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLQ84U241e-124Q84U24_ANTMA; LIPLESS1
STRINGVIT_07s0031g00220.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-104AP2 family protein